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GraphMLDataset

GraphMLDataset loads and saves graph data in GraphML format using NetworkX.

kedro_datasets.networkx.GraphMLDataset 

GraphMLDataset(
    *,
    filepath,
    load_args=None,
    save_args=None,
    version=None,
    credentials=None,
    fs_args=None,
    metadata=None
)

Bases: AbstractVersionedDataset[Graph, Graph]

GraphMLDataset loads and saves graphs to a GraphML file using an underlying filesystem (e.g.: local, S3, GCS). NetworkX is used to create GraphML data.

See https://networkx.org/documentation/stable/tutorial.html for details.

Examples:

Using the Python API:

>>> import networkx as nx
>>> from kedro_datasets.networkx import GraphMLDataset
>>>
>>> graph = nx.complete_graph(100)
>>>
>>> graph_dataset = GraphMLDataset(filepath=tmp_path / "test.graphml")
>>> graph_dataset.save(graph)
>>> reloaded = graph_dataset.load()
>>> assert nx.is_isomorphic(graph, reloaded)

Parameters:

  • filepath (str) –

    Filepath in POSIX format to the NetworkX GraphML file.

  • load_args (dict[str, Any] | None, default: None ) –

    Arguments passed on to networkx.read_graphml. See the details in https://networkx.org/documentation/stable/reference/readwrite/generated/networkx.readwrite.graphml.read_graphml.html

  • save_args (dict[str, Any] | None, default: None ) –

    Arguments passed on to networkx.write_graphml. See the details in https://networkx.org/documentation/stable/reference/readwrite/generated/networkx.readwrite.graphml.write_graphml.html

  • version (Version | None, default: None ) –

    If specified, should be an instance of kedro.io.core.Version. If its load attribute is None, the latest version will be loaded. If its save attribute is None, save version will be autogenerated.

  • credentials (dict[str, Any] | None, default: None ) –

    Credentials required to get access to the underlying filesystem. E.g. for GCSFileSystem it should look like {"token": None}.

  • fs_args (dict[str, Any] | None, default: None ) –

    Extra arguments to pass into underlying filesystem class constructor (e.g. {"project": "my-project"} for GCSFileSystem), as well as to pass to the filesystem's open method through nested keys open_args_load and open_args_save. Here you can find all available arguments for open: https://filesystem-spec.readthedocs.io/en/latest/api.html#fsspec.spec.AbstractFileSystem.open All defaults are preserved, except mode, which is set to rb when loading and to wb when saving.

  • metadata (dict[str, Any] | None, default: None ) –

    Any arbitrary metadata. This is ignored by Kedro, but may be consumed by users or external plugins.

Source code in kedro_datasets/networkx/graphml_dataset.py 
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def __init__(  # noqa: PLR0913
    self,
    *,
    filepath: str,
    load_args: dict[str, Any] | None = None,
    save_args: dict[str, Any] | None = None,
    version: Version | None = None,
    credentials: dict[str, Any] | None = None,
    fs_args: dict[str, Any] | None = None,
    metadata: dict[str, Any] | None = None,
) -> None:
    """Creates a new instance of ``GraphMLDataset``.

    Args:
        filepath: Filepath in POSIX format to the NetworkX GraphML file.
        load_args: Arguments passed on to ``networkx.read_graphml``.
            See the details in
            https://networkx.org/documentation/stable/reference/readwrite/generated/networkx.readwrite.graphml.read_graphml.html
        save_args: Arguments passed on to ``networkx.write_graphml``.
            See the details in
            https://networkx.org/documentation/stable/reference/readwrite/generated/networkx.readwrite.graphml.write_graphml.html
        version: If specified, should be an instance of
            ``kedro.io.core.Version``. If its ``load`` attribute is
            None, the latest version will be loaded. If its ``save``
            attribute is None, save version will be autogenerated.
        credentials: Credentials required to get access to the underlying filesystem.
            E.g. for ``GCSFileSystem`` it should look like `{"token": None}`.
        fs_args: Extra arguments to pass into underlying filesystem class constructor
            (e.g. `{"project": "my-project"}` for ``GCSFileSystem``), as well as
            to pass to the filesystem's `open` method through nested keys
            `open_args_load` and `open_args_save`.
            Here you can find all available arguments for `open`:
            https://filesystem-spec.readthedocs.io/en/latest/api.html#fsspec.spec.AbstractFileSystem.open
            All defaults are preserved, except `mode`, which is set to `rb` when loading
            and to `wb` when saving.
        metadata: Any arbitrary metadata.
            This is ignored by Kedro, but may be consumed by users or external plugins.
    """
    _fs_args = deepcopy(fs_args) or {}
    _fs_open_args_load = _fs_args.pop("open_args_load", {})
    _fs_open_args_save = _fs_args.pop("open_args_save", {})
    _credentials = deepcopy(credentials) or {}

    protocol, path = get_protocol_and_path(filepath, version)
    if protocol == "file":
        _fs_args.setdefault("auto_mkdir", True)

    self._protocol = protocol
    self._fs = fsspec.filesystem(self._protocol, **_credentials, **_fs_args)

    self.metadata = metadata

    super().__init__(
        filepath=PurePosixPath(path),
        version=version,
        exists_function=self._fs.exists,
        glob_function=self._fs.glob,
    )

    # Handle default load and save and fs arguments
    self._load_args = {**self.DEFAULT_LOAD_ARGS, **(load_args or {})}
    self._save_args = {**self.DEFAULT_SAVE_ARGS, **(save_args or {})}
    self._fs_open_args_load = {
        **self.DEFAULT_FS_ARGS.get("open_args_load", {}),
        **(_fs_open_args_load or {}),
    }
    self._fs_open_args_save = {
        **self.DEFAULT_FS_ARGS.get("open_args_save", {}),
        **(_fs_open_args_save or {}),
    }

DEFAULT_FS_ARGS class-attribute instance-attribute 

DEFAULT_FS_ARGS = {
    "open_args_save": {"mode": "wb"},
    "open_args_load": {"mode": "rb"},
}

DEFAULT_LOAD_ARGS class-attribute instance-attribute 

DEFAULT_LOAD_ARGS = {}

DEFAULT_SAVE_ARGS class-attribute instance-attribute 

DEFAULT_SAVE_ARGS = {}

_fs instance-attribute 

_fs = filesystem(_protocol, **_credentials, **_fs_args)

_fs_open_args_load instance-attribute 

_fs_open_args_load = {
    None: get("open_args_load", {}),
    None: _fs_open_args_load or {},
}

_fs_open_args_save instance-attribute 

_fs_open_args_save = {
    None: get("open_args_save", {}),
    None: _fs_open_args_save or {},
}

_load_args instance-attribute 

_load_args = {
    None: DEFAULT_LOAD_ARGS,
    None: load_args or {},
}

_protocol instance-attribute 

_protocol = protocol

_save_args instance-attribute 

_save_args = {
    None: DEFAULT_SAVE_ARGS,
    None: save_args or {},
}

metadata instance-attribute 

metadata = metadata

_describe 

_describe()
Source code in kedro_datasets/networkx/graphml_dataset.py 
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def _describe(self) -> dict[str, Any]:
    return {
        "filepath": self._filepath,
        "protocol": self._protocol,
        "load_args": self._load_args,
        "save_args": self._save_args,
        "version": self._version,
    }

_exists 

_exists()
Source code in kedro_datasets/networkx/graphml_dataset.py 
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def _exists(self) -> bool:
    load_path = get_filepath_str(self._get_load_path(), self._protocol)
    return self._fs.exists(load_path)

_invalidate_cache 

_invalidate_cache()

Invalidate underlying filesystem caches.

Source code in kedro_datasets/networkx/graphml_dataset.py 
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def _invalidate_cache(self) -> None:
    """Invalidate underlying filesystem caches."""
    filepath = get_filepath_str(self._filepath, self._protocol)
    self._fs.invalidate_cache(filepath)

_release 

_release()
Source code in kedro_datasets/networkx/graphml_dataset.py 
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def _release(self) -> None:
    super()._release()
    self._invalidate_cache()

load 

load()
Source code in kedro_datasets/networkx/graphml_dataset.py 
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def load(self) -> networkx.Graph:
    load_path = get_filepath_str(self._get_load_path(), self._protocol)
    with self._fs.open(load_path, **self._fs_open_args_load) as fs_file:
        return networkx.read_graphml(fs_file, **self._load_args)

save 

save(data)
Source code in kedro_datasets/networkx/graphml_dataset.py 
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def save(self, data: networkx.Graph) -> None:
    save_path = get_filepath_str(self._get_save_path(), self._protocol)
    with self._fs.open(save_path, **self._fs_open_args_save) as fs_file:
        networkx.write_graphml(data, fs_file, **self._save_args)
    self._invalidate_cache()
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